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Phylogenetic Analysis
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Multiple sequence alignment based phylogenetic tree prediction program.
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TreeTop Phylogenetic Tree prediction The source sequence multiple alignment could be formed from low and upper case letters. Upper case letters will show that there is a homology between correspondent fragments in alignment. Help References Your E-mail address Full Query Form Tree and Picture...EBI server for multiple sequence alignment on the web
http://www.ebi.ac.uk/clustalw/
A collection of phylogenetics programs available at Pasteur Institute. Includes a number of Phylip programs.
http://bioweb.pasteur.fr/seqanal/phylogeny/intro-uk.html
Tool that uses split decomposition method to analyze and visualize distance data from biological sequences.
site exerpt
Tree uses the split decomposition method to analyze and visualize distance data, especially extracted from biological sequences. If you want to know more details, you should take a look at references. Splitstree is developed by Prof. Dr. Daniel Huson, leader...A tool for constructing phylogenies based on gene order for unichromosomal and multichromosomal genomes
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GRIMM Genome Rearrangement Algorithms Genome rearrangement algorithms genomes: Genome 1: Genome 2: Genome 3: Chromosomes: circular linear (directed) multichromosomal or undirectedSigns: signed unsigned Or, choose sample data 7 step scenario Fission Fusion Translocation Reversal Flip chromosome Permute chromosomes Circular chromosome I Circular chromosome II...Tree generation from distance data. [Results by email]
http://cbrg.inf.ethz.ch/Server/subsection3_1_6.html
A multiple-sequence alignment program that also includes distance matrix methods for inferring trees.
http://cbrg.inf.ethz.ch/Server/MultAlign.html
Multiple sequence alignment server and whole genome alignment database.
http://gsd.lbl.gov/vista/index.shtml