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Software

Websites
Freely available crystallographic software for single crystal and powder diffraction.
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CCP14 Homepage Single Crystal and Powder Diffraction Freely Available Crystallographic Software for Academia  What do you want to do lists of software by crystallographic method) Tutorials Solutions (Go to CCP14 Main page in No Frames Mode) 1st September 2000: Update page on SPAM E-mail supposedly Originating from the CCP14.ac.uk domain 21st August 2000:...
http://www.ccp14.ac.uk

Qualitative and quantitative analysis of crystallographic textures. ODF calculation using both types of experimental data - pole figures (X-ray, neutrons) or sets of individual orientations (EBSD, model calculations). Windows platform.
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LaboSoft  This page uses frames, but your browser doesn't support them....
http://www.labosoft.com.pl/

Display molecules and molecular surfaces, optionally representing a field (for example electrostatic) as local colors. Silicon Graphics (IRIX) platform.
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GRASP Home Page  P is a molecular visualization and analysis program. It is particularly useful for the display and manipulation of the surfaces of molecules and their electrostatic properties. General Description Representational Forms Functionality Example Images Grasp Slide Show (Requires Java capable browser)...
http://trantor.bioc.columbia.edu/grasp/

Comprehensive computing suite for protein crystallography. VMS and Unix platforms.
http://www.dl.ac.uk/CCP/CCP4/main.html

O
Directory of information for users of the "O" crystallographic package to model, display and build macromolecules. Silicon Graphics (IRIX) and Linux platform.
http://imsb.au.dk/~mok/o/

Protein structure validation program. Unix platform.
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PROCHECK protein structure checks  K protein structure checks PROCHECK v.3.5.4 Roman A Laskowski, Malcolm W MacArthur, David K Smith, David T Jones, E Gail Hutchinson, A Louise Morris, David S Moss Janet M Thornton Checks the stereochemical quality of a protein structure, producing a...
http://www.biochem.ucl.ac.uk/~roman/procheck/procheck.html

Database of software for crystallography.
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SINCRIS software list  The editor cannot answer to technical questions about software he did not write! Please direct your questions to the authors. For educational software, please look also in CWW Teaching and Education section. Software database for crystallography A B C D...
http://www.lmcp.jussieu.fr/sincris/logiciel/#liste

Software for macromolecular crystallography and structural biology. Many of these programs collaborate with "O" (see there).
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Uppsala Software Factory  You can still use the menu to navigate through our site....
http://alpha2.bmc.uu.se/~gerard/manuals/

SnB
A computer program based on Shake-and-Bake, a dual-space direct-methods procedure for determining crystal structures from X-ray diffraction data.
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SnB Home Page  B is a computer program based on Shake-and-Bake, a dual-space direct-methods procedure for determining crystal structures from X-ray diffraction data. This program has been used in a routine fashion to solve difficult structures, containing as many as 1000 unique non-H...
http://www.hwi.buffalo.edu/SnB/

Display and manipulation of crystal structures and simulation of diffraction patterns. Windows 95/98/NT platform.
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Crystal Studio Home Page  ...
http://www.crystalsoftcorp.com/CrystalStudio/

System for solving and refinement of regular, modulated and composite structures from monocrystal and powder diffraction data.
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 X-Ray laboratory in the Institute of Physics, Prague Please use this link...
http://www-xray.fzu.cz/jana/jana.html

an MS Windows application for the exploration and drawing of crystal structures.
http://www.crystalimpact.com/diamond

A versatile crystallographic program implementing a large variety of standard geometrical calculations, tests, utilities, graphics and several filters. Unix and Windows platforms.
http://www.cryst.chem.uu.nl/platon/

HKL
The triad of Denzo, XDisplayF and Scalepack: programs to visualize and interpret X-ray diffraction images.
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Welcome to HKL Research, Inc.  You need frames friendly browser This document is designed to be viewed using frames friendly browser. If you are seeing this message, you are using a frame challenged browser. Click here for standard version of the document. A Frame-capable browser...
http://www.hkl-xray.com/

Qualitative and quantitative analysis of crystallographic textures. ODF calculation using both types of experimental data : pole figures (X-Ray,neutrons) or sets of individual orientations (EBSD,model calculations).
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LaboSoft  This page uses frames, but your browser doesn't support them....
http://www.labosoft.com.pl/ver20.htm

Tool for building, studying and visualizing all kinds of crystal structures. MacOS platform.
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CrystalDesigner home page  Welcome to the home page of CrystalDesigner CrystalDesigner is a computer program for building, studying and visualising all kinds of crystal structures. The software has been developed by Crystal Structure Design AS and runs under Macintosh Operating System. Contents About...
http://www.crystaldesigner.no/

Real-time photo-realistic crystal structures program for Macintosh. Download a demo version - plus our free diffraction software and QuickTime VR movies.
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CrystalMaker Software: Crystal Molecular Structures Visualization and Diffraction  All rights reserved worldwide CrystalMaker is a registered trademark of CrystalMaker Software Ltd. people have visited this page We provide elegant and powerful crystallography software for Microsoft Windows XP and Apple Mac OS X (including Tiger Our flagship product, CrystalMaker,...
http://www.crystalmaker.co.uk/

The software package for single crystal X-ray structure refinement and analysis consists of CRYSTALS, Cameron and specially recompiled versions of SIR92 and SHELXS.
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Chemical Crystallography Oxford: Crystals  Contains small bugfix for H restraints. List of fixes. 21 Jan 05 Richard Cooper has moved to Oxford Diffraction. 11 Oct 04 An updated CRYSTALS wiki is available Recent Changes 05 Jul 05 Updated manuals are now available as PDF...
http://www.xtl.ox.ac.uk/crystals.html

AutoDock is a suite of automated docking tools. It is designed to predict how small molecules, such as substrates or drug candidates, bind to a receptor of known 3D structure.
http://www.scripps.edu/pub/olson-web/doc/autodock/

Freely available crystallographic software for Academia
http://www.ccp14.ac.uk/

A UNIX-based software package for instrument control and data acquisition used for X-ray diffraction laboratories.
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CSS Certified Scientific Software.  Meeting the software needs of scientists since 1985 Certified Scientific Software's spec X-Ray Diffraction and Data Acquisition software provides scientists with reliable instrument control at more than 400 X-ray and neutron diffractometers at over 165 locations worldwide. Developed in 1986...
http://www.certif.com/

CaRIne is used for teaching crystallography and for research in materials science, chemistry and earth sciences. It brings real lattices, X-Ray diffraction diagrams, reciprocal lattices and stereographic projections all at the same time in a multi-windowed interface.
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CaRIne Crystallography Software  The crystallographic software for research and teaching   1 software, 2 complementary and compatible versions   Website navigator CaRIne Crystallography CaRIne Full description Teaching with CaRIne Resources download Support Contact Sales News TRIAL VERSION 4.0Now available The trial version of...
http://pro.wanadoo.fr/carine.crystallography/

Software and methods source for molecular model visualization (Mage, JavaMage, Prekin); model validation via all-atom contact analysis (Probe, Reduce, MolProbity) and utility (Kincontour, Dang, Cluster, Bndlst, Atvol). Amino acid rotamers database for model building. Kinemages for instruction and research.
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Richardson Lab Kinemage Home Page  D structure of proteins nucleic acids All-atom contacts; structure improvement; backbone motions; sidechain rotamers RNA Backbone is Rotameric Teaching: Course materials Duke courses: BCH222, BCH258, BCH291. workshops on model quality, like the 2005 Cold Spring Harbor X-Ray Course and the...
http://kinemage.biochem.duke.edu

Open source software for solving crystal structures from powder diffraction data (or single crystal data) by Monte Carlo methods.
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ESPOIR Homepage  Carlo and pseudo simulated annealing code for ab initio crystal structure determination, either from scratch (random starting model) or by molecule location fitting either to Fobs extracted by powder diffractometry or to single crystal data. Structures may come across by...
http://www.cristal.org/sdpd/espoir/

Multi-purpose tool for crystal structure visualization and analysis, free download, available for Windows and Linux
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KPLOT Download Page  The page you have requested has moved. You will be redirected automatically. If this does not work, please follow this link: KPLOT Download Area Page last modified March 29, 2004. Copyright1997-2004 Crystal Impact GbR. All rights reserved....
http://www.crystalimpact.de/kplot.htm

Programs for calculation and graphical representation of multiple diffraction patterns.
http://www.rrz.uni-hamburg.de/mpi/rossmanith/frame.html

System of programs for solving, refining and analysing single crystal X-ray diffraction data for small molecules. Provides a consistent and user-friendly GUI for some of the best publicly-available crystallographic programs. Interfaces to other popular programs such as SHELXL-97 and SIR-97.
http://www.chem.gla.ac.uk/~louis/software/wingx

Modelling amorphous structures by a Rietveld-type refinement of the atomic coordinates. Windows 9x/NT platform.
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ARITVE software  Glass structure modelling software NEW Y2K version General description ARITVE models glass structures by a Rietveld-type approach (RDM Rietveld for Disordered Materials method A crystalline model is selected, then the corresponding calculated diffraction pattern (possibly neutron X-ray) is compared to...
http://www.cristal.org/aritve.html

A crystallographic package for crystal structure determination from single crystal diffraction data.
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crystal analysis operating system  Italy download test files win95/98/NTUnix download program back to isc homepage...
http://www.ccp14.ac.uk/ccp/web-mirrors/caos/isc/caos/

Topological analysis program for experimental static electron density based on Hansen-Coppens multipole formalism.
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TOPXD main page  This page uses frames, but your browser doesn't support them....
http://harker.chem.buffalo.edu/public/topxd/

Refinement of crystal shape against the intensities of multiple measured reflections coming from redundant area detector data for an analytical absorption correction. Needs the PLATON package.
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EUHEDRAL  Unfortunately it can be difficult to measure the crystal size and to index the crystal faces. Several laboratories have therefore developed computer programs to refine the initial crystal description (e.g. the HABITUS program of W. Herrendorf Our program EUHEDRAL was...
http://www.crystal.chem.uu.nl/distr/euhedral/

Set of programs for crystal structure determination from single-crystal diffraction data. Runs on all systems including DOS.
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SHELX Program Page  This homepage provides general information about the SHELX system of crystallographic programs, and should be read by anyone planning to use the programs for the first time. See below for how to obtain the programs. Existing users should check this...
http://shelx.uni-ac.gwdg.de/SHELX/

FOX
A free, open-source program for the global optimization of crystal structures from powder diffraction data.
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Fox Manual  D crystal view can now be exported to a POV-Ray file (example Reflections are now labeled on the powder pattern view. A important bug which resulted in small (up to 2 pixels) shifts of the peak positions in powder patterns...
http://objcryst.sourceforge.net/Fox/

A program designed for the solution of crystal structures from powder diffraction data. Its concept implies a combined global optimization of the difference between the calculated and measured diffraction pattern and of the potential energy of the system.
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Endeavour Structure Solution from Powder Diffraction  Endeavour is designed for the solution of crystal structures from powder diffraction data. Its innovative concept implies a combined global optimization of the difference between the calculated and measured diffraction pattern and of the potential energy of the system. Endeavour...
http://www.crystalimpact.com/endeavour/

a Java applet that displays d-spacings for given mineral data. New minerals can be added if the appropriate crystallographic data are supplied. A full-fledged Java application (Crystal Clear) with more options may also be downloaded.
http://www.public.asu.edu/~bdegreg/crystalweb.htm

A general-purpose data fitting program being developed to analyze powder diffraction patterns, but it can be used to fit analytical (especially peak-shaped) functions to any kind of data.
http://www.unipress.waw.pl/~wojdyr/fityk/

Program for automatic solution of crystal structures by direct and Patterson methods. It can be used both for resolution and refinement of small/medium size crystal structures and for macromolecules. For Windows, Linux, and Unix platforms.
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Sir2004 Home Page  ...
http://www.ic.cnr.it/Varie/Sir2004.htm

Several programs used in the analysis and handling of diffraction data and atomic parameters from molecular compounds. Fortran sources and binaries for DOS and Silicon Graphics.
http://www.unipr.it/~nardelli/software.html

Program for location of a fragment of known geometry by integrated Patterson, packing, and direct methods.
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PATSEE Homepage  E is a public domain program for location of a fragment of known geometry by integrated Patterson, packing, and direct methods (Egert, E Sheldrick, G.M Acta Crystallographica, A41, 262-268, 1985).The program attempts to combine the merits of both Patterson and...
http://www.chemie.uni-frankfurt.de/egert/html/patsee.html

Software for molecular visualization in biology, chemistry and biochemistry education. MacOS and Windows platforms.
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PCMolecule2 and MacMolecule2 Molecular Graphics Software  Both programs render molecules from data files in our native or Brookhaven PDB format. Both programs are remarkable for ease of use, speed of display/rotation of very large molecules, and very high quality of visualizations. PCMolecule2 and MacMolecule2 contain features...
http://www.blc.arizona.edu/linus/linus.html

Implementation of a Molecular Replacement method which simultaneously determines the rotational and translational parameters of all copies of a search model in the crystallographic asymmetric unit of a target structure. Unix, VMS and Windows platforms.
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Queen of Spades  Spades is free software and you are encouraged to use, copy, modify, and distribute both the program and its documentation (here is the documentation in html 3.2 format, or you can view the corresponding pdf file (270 KBytes If you...
http://origin.imbb.forth.gr/~glykos/Qs.html

RAD - program for analysis of X-ray diffraction data from amorphous materials. FIT - program for decomposition of powder diffraction patterns and profile analysis of pair correlation functions. PEDX - program for radial-distribution-function analysis of energy-dispersive X-ray diffraction data from disordered materials. IFO - program for image-reconstruction-type calculation of atomic distribution functions for disordered materials.
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 If you need some additional information, please let me know Disclaimer: This software may be freely used for scientific and educational purposes only. Neither the Author nor MSU makes any warranty, expresses or assumes any liability or responsibility for the...
http://www.pa.msu.edu/~petkov/software.html

Set of programs for the processing and analysis of both single crystal and powder diffraction data.
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GSAS Notes  S package can be used with both single-crystal and powder diffraction data (Rietveld analysis even both simultaneously. Neutron data can be either from single-wavelength instruments, or for those a bit more masochistic, time-of-flight instrumentation. Up to 99 different sets of...
http://www.ncnr.nist.gov/program...ystallography/software/gsas.html

A graphical interface for analyzing data from 2D X-ray diffraction detectors (wire, image plate, CCD). Particularly useful for the analysis of powder diffraction data, diffuse scattering from polymers or liquid crystals, or small-angle scattering from colloids, polymers, gels, or solutions. Runs on PC, Mac, Linux.
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Datasqueeze Software  The interface is simple and intuitive, and the program is easy to use even for those new to x-ray diffraction analysis. Datasqueeze is particularly useful for the analysis of powder diffraction data, diffuse scattering from polymers or liquid crystals, or...
http://www.datasqueezesoftware.com

Intuitive, user-friendly graphical program for CIF checking, editing and visualisation. Windows, Linux and Solaris platform.
http://www.ccdc.cam.ac.uk/prods/encifer/

A package of over sixty programs for calculations ranging from the reduction of raw diffraction intensities, to the solution, refinement and publication of crystal structures. These are applicable to X-ray, neutron and electron diffraction analyses, including charge density studies. The package contains interactive graphics tools and is available as execution modules for most common platforms.
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Homepage of the Gnu Xtal System  Some functionality may therefore be broken. AccessKeys: Home (0) Start (2) NextDoc (4) Next (7) Top (8) Bottom (9) OPEN RELEASE of Version 3.7 of the Gnu Xtal System of Crystallographic Programs The Gnu Xtal System is a reasonably comprehensive, modular suite of software oriented primarily towards small molecule crystallography (with a smattering...
http://xtal.sourceforge.net/

Integrated package of computer programs for the solution and refinement of crystal structures using single crystal data. Unix and Windows platform.
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The web site of the Institute of Crystallography  ...
http://www.ic.cnr.it/

A program package for multipurpose geometrical and topological analysis of crystal structures. It works with crystal structure databases.
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Main Page  Latest additions and corrections 19 May, 2005 Mirror sites: USA Canada Australia United Kingdom Free downloading TOPOS 4.0 abilities TOPOS 4.0 Manuals TOPOS 3.2 practical works TOPOS 3.2/4.0 research papers Do you want to know of the crystal structure more...
http://www.topos.ssu.samara.ru/

The Oak Ridge Thermal Ellipsoid Plot (ORTEP) program is a computer program, written in Fortran, for drawing crystal structure illustrations.
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ORTEP-III  ORTEP-III Oak Ridge Thermal Ellipsoid Plot Program for Crystal Structure Illustrations Michael N. Burnett and Carroll K. Johnson Oak Ridge National Laboratory VERSION 1.0.3 (JAN. 31, 2000) NOW AVAILABLE What's ORTEP What's New in ORTEP-III Online Documentation User's Manual Fortran...
http://www.ornl.gov/sci/ortep/

The program for prediction of interatomic distances in a crystal structure.
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Redirection to superspace.epfl.ch  Valence page has been relocated to new permanent address http orlov.ch/bondval You will find there all the pages in the same order. Please wait a second to be transferred there and don't forget to update your links bookmarks. Sorry for...
http://marie.epfl.ch/orlov/bondval/

An application that can be used to construct, maintain, and record the results of many crystallisation experiments.
http://zombie.imsb.au.dk/xact/

Research and education tool for quickly orientating and indexing back-reflection Laue patterns from Polaroid films. Windows platform.
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ScanOrient; Crystal Orientation Software for Polaroid back-reflection Laue Images  M is an excellent production, research and/or education tool for quickly orientating and indexing back-reflection Laue patterns from PolaroidTM films and now you can buy it on-line! ScanORIENTTM provides: Simple data entry from 4 x 5 9 x 12 cm)...
http://www.multiwire.com/ScanOrient.html

Offers a comprehensive range of tools for structure visualisation and the exploration of crystal packing. Free download, available for Windows, AIX, IRIX, Linux and Solaris.
http://www.ccdc.cam.ac.uk/products/csd_system/mercury/

An X-windows tool for visualising molecular crystal structures on UNIX (including Linux) platforms.
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RPluto  A range of input file formats (CSD FDAT, SHELX and CIF formats) Data typed in free-format style (i.e. from file or keyboard which may be useful for comparing current work with examples from the CSD Display of both molecular and...
http://www.ccdc.cam.ac.uk/free_services/rpluto/

A computer program for refining a model of isomorphous heavy-atom substitution and calculating phase probabilities from it. Irix and Linux platforms.
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SHARP/autoSHARP distribution  Latest news about the programs and these pages on our WWW server Documentation Detailed installation instructions Some upgrade notes for users of Sushi 3.2.X users of Sushi 3.0.X users of SHARP 1.4.X and Sushi 3.0.X users of SHARP 1.3.X and...
http://www.globalphasing.com/sharp/

A software system for crystallographic structure determination by Bayesian statistical methods. Irix and Linux platforms.
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BUSTER-TNT distribution  Latest news about the programs Documentation The complete BUSTER-TNT manual on-line Detailed installation instructions Information The buster-discuss mailing list (includes archives You should probably subscribe to this. Licensing Type(s) of licences available to end users How to request an initial...
http://www.globalphasing.com/buster/

A .NET dynamic link library used for the interconversion procedure between variable formats of Powder X-Ray files. The DLL is capable of handling 14 file formats (binary and ASCII).
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Nikos Homepage  Complete password manager and advanced password generator for creating strong passwords using random or pseudo random options (more Easy WinBabel: Windows front-end for the molecular conversion program Babel (more NKMapper: Html Image Map editor (more Source Code Statistics: Source code...
http://users.uoi.gr/nkourkou/

A computer program system for crystal structure determination by Patterson methods and direct methods applied to difference structure factors.
http://www.xtal.sci.ru.nl/dirdif/software/dirdif.html

A live-CD of the GNU/Linux mounted with the importants programs of crystallography for the powder methods.
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Kcristal project Vegner Utuni  Links is for the pages of the authors or great interest DBWS (starting part of the new source) http www.physics.gatech.edu/downloads/young/download_dbws.html http labcacc.iq.unesp.br/ Espoir (in very init tests) 1http www.cristal.org/sdpd/espoir/index.html Fityk http www.unipress.waw.pl/soft/crystallography/fityk/ FOX (in test) http objcryst.sourceforge.net/ Fullprof http www-llb.cea.fr/fullweb/powder.htm...
http://labcacc.iq.unesp.br/kcristal/

Calculates crystal plane d-spacings and angles between Miller planes based on unit cell dimensions.
http://www.public.asu.edu/~bdegreg/Xtalplanes.html

A program for qualitative (PDF2 data base) and least-square full-profile quantitative analysis of phases in crystaline and amorphous powder samples by X-Ray diffraction. Windows platform.
http://www.xpowder.com

A programm for converting between different X-ray powder diffraction file formats. Windows platform.
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XRD Conversion Programme  The most recent version is dated 26/5/98 (Support for new filetypes and the following file formats are supported: CONVERT reads Philips VAX APD and writes Philips VAX APD Philips PC APD (RD format) Philips PC APD (RD format) RIET7 Rietveld...
http://www.ccp14.ac.uk/ccp/web-mirrors/convx/

Windows Software for Crystallography and Molecular Modelling from National University of Ireland.
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 Commercial users must obtain permission for its use. Oscail tutorials covering Molecular Modelling and Crystallography are available. This Windows software provides an integrated high quality system for building and modelling molecules (Mopac and Iconc are included) and the system drives...
http://www.ucg.ie/cryst/software.htm

An interactive tool for generating, visualizing, and manipulating the structural distortion modes of crystalline materials.
http://stokes.byu.edu/isodisplace.html

A program for prediction of interatomic distances in crystal structures.
http://orlov.ch/bondval/